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Macros for image analysis using Fiji/ImageJ
The list below contains a series of macros that have been developed by Paul Thomas, facility manager, for various users of the Bio Imaging platform. Please feel free to use, or modify, them in any way.
To load the macros into Fiji/ImageJ either:
A. Go to the Plugins menu, choose Macros → Run… , and navigate to the macro of choice (Note: some of the macros may require that an image already be open before running).
B. Open the macro by going to Plugins → Macros → Edit… , and copy all of the text, then using the File menu of the Editor open “StartupMacros.fiji.ijm” (found in fiji.app\macros\), and paste the text of the new macro into the StartupMacros file. Restart Fiji and the new macro will appear in the Plugins → Macros menu every time you start Fiji. (Note: If you like, you can enter: macro "-" {} between individual macros, or groups of macros, to create a line between macros in the menu, and make the appearance cleaner.)